KARAKTERISASI ISOLAT BAKTERI RIZOSFER JAGUNG HIBRIDA (Zea mays L.) PADA TANAH MASAM
DOI:
https://doi.org/10.30605/cq4z0s16Keywords:
hybrid maize, acidic soil, rhizosphere, bacterial isolation, characterizationAbstract
Acidic soil is one of the major constraints in maize cultivation because low soil pH can increase the solubility of Al and Fe, inhibit root growth, and reduce nutrient availability, particularly phosphorus. Rhizosphere bacteria have the potential to support plant growth through various mechanisms; therefore, the exploration of local bacterial isolates from acidic soil environments is important. This study aimed to isolate and characterize rhizosphere bacteria associated with hybrid maize grown in acidic soil in Moncongloe Village, Maros Regency. Bacterial isolation was carried out using serial dilution and cultivation on Nutrient Agar (NA) medium, followed by colony purification and characterization based on colony morphology, Gram reaction using 3% KOH, and catalase activity using 3% H₂O₂. The results showed that 14 bacterial isolates were obtained from maize rhizosphere samples for further characterization. All isolates showed a Gram-positive reaction, while the catalase test revealed that 11 isolates (78.57%) were catalase-positive and 3 isolates (21.43%) were catalase-negative. Differences in morphological and basic biochemical characteristics indicate the diversity of rhizosphere bacterial isolates capable of growing under acidic soil conditions. These isolates have the potential to serve as local microbial candidates for biofertilizer development; however, further studies are required to evaluate their PGPR functional traits, biosafety, and molecular identification.
References
Agarwal, H., Bajpai, S., Mishra, A., Kohli, I., Varma, A., Fouillaud, M., Dufossé, L., & Joshi, N. C. (2023). Bacterial Pigments and Their Multifaceted Roles in Contemporary Biotechnology and Pharmacological Applications. Microorganisms, 11(3). https://doi.org/10.3390/microorganisms11030614
Akplo, T. M., Kouelo Alladassi, F., Zoundji, M. C. C., Faye, A., Hernández, M., Yemadje, P. L., Fagnibo, A. H., & Houngnandan, P. (2025). Phosphate solubilization and mobilization: bacteria-mycorrhiza interactions. Letters in Applied Microbiology, 78(8). https://doi.org/10.1093/lambio/ovaf105
Alonazi, M. A., Alwathnani, H. A., AL-Barakah, F. N. I., & Alotaibi, F. (2025). Native Plant Growth-Promoting Rhizobacteria Containing ACC Deaminase Promote Plant Growth and Alleviate Salinity and Heat Stress in Maize (Zea mays L.) Plants in Saudi Arabia. Plants, 14(7), 1–20. https://doi.org/10.3390/plants14071107
Aloo, B. N., Tripathi, V., Makumba, B. A., & Mbega, E. R. (2022). Plant growth-promoting rhizobacterial biofertilizers for crop production: The past, present, and future. Frontiers in Plant Science, 13(September), 1–15. https://doi.org/10.3389/fpls.2022.1002448
Bano, S., WU, X., & Zhang, X. (2021). Towards sustainable agriculture: rhizosphere microbiome engineering. Applied Microbiology and Biotechnology, 105, 7141–7160. https://doi.org/https://doi.org/10.1007/s00253-021-11555-w
Barreto, J. V. de O., Casanova, L. M., Junior, A. N., Reis-Mansur, M. C. P. P., & Vermelho, A. B. (2023). Microbial Pigments: Major Groups and Industrial Applications. Microorganisms, 11(12). https://doi.org/10.3390/microorganisms11122920
Caldeira, N. G. S., de Souza, M. L. S., de Miranda, R. V. da S. L., da Costa, L. V., Forsythe, S. J., Zahner, V., & Brandão, M. L. L. (2024). Characterization by MALDI-TOF MS and 16S rRNA Gene Sequencing of Aerobic Endospore-Forming Bacteria Isolated from Pharmaceutical Facility in Rio de Janeiro, Brazil. Microorganisms, 12(4). https://doi.org/10.3390/microorganisms12040724
Celedón, R. S., & Díaz, L. B. (2021). Natural pigments of bacterial origin and their possible biomedical applications. Microorganisms, 9(4), 1–12. https://doi.org/10.3390/microorganisms9040739
Chandran, H., Meena, M., & Swapnil, P. (2021). Plant growth-promoting rhizobacteria as a green alternative for sustainable agriculture. Sustainability (Switzerland), 13(19), 1–30. https://doi.org/10.3390/su131910986
Chaturwedi, S. B., Mainali, S., & Chaudhary, R. (2024). Antibacterial activity of pigment extracted from bacteria isolated from soil samples. BMC Research Notes, 17(1), 4–9. https://doi.org/10.1186/s13104-024-06834-4
CHE, J., ZHAO, X. Q., & SHEN, R. F. (2023). Molecular mechanisms of plant adaptation to acid soils: A review. Pedosphere, 33(1), 14–22. https://doi.org/10.1016/j.pedsph.2022.10.001
Cirillo, V., Romano, I., Woo, S. L., Di Stasio, E., Lombardi, N., Comite, E., Pepe, O., Ventorino, V., & Maggio, A. (2023). Inoculation with a microbial consortium increases soil microbial diversity and improves agronomic traits of tomato under water and nitrogen deficiency. Frontiers in Plant Science, 14(December), 1–14. https://doi.org/10.3389/fpls.2023.1304627
de-Bashan, L., & Nannipieri, P. (2024). Recommendations for plant growth-promoting bacteria inoculation studies. Biology and Fertility of Soils, 60(3), 259–261. https://doi.org/10.1007/s00374-024-01798-w
de Andrade, L. A., Santos, C. H. B., Frezarin, E. T., Sales, L. R., & Rigobelo, E. C. (2023). Plant Growth-Promoting Rhizobacteria for Sustainable Agricultural Production. Microorganisms, 11(4). https://doi.org/10.3390/microorganisms11041088
Díaz-Rodríguez, A. M., Parra Cota, F. I., Cira Chávez, L. A., García Ortega, L. F., Estrada Alvarado, M. I., Santoyo, G., & de los Santos-Villalobos, S. (2025). Microbial Inoculants in Sustainable Agriculture: Advancements, Challenges, and Future Directions. Plants, 14(2), 1–19. https://doi.org/10.3390/plants14020191
Dimkić, I., Janakiev, T., Petrović, M., Degrassi, G., & Fira, D. (2022). Plant-associated Bacillus and Pseudomonas antimicrobial activities in plant disease suppression via biological control mechanisms - A review. Physiological and Molecular Plant Pathology, 117(October 2021). https://doi.org/10.1016/j.pmpp.2021.101754
dos Reis, G. A., Martínez-Burgos, W. J., Pozzan, R., Pastrana Puche, Y., Ocán-Torres, D., de Queiroz Fonseca Mota, P., Rodrigues, C., Lima Serra, J., Scapini, T., Karp, S. G., & Soccol, C. R. (2024). Comprehensive Review of Microbial Inoculants: Agricultural Applications, Technology Trends in Patents, and Regulatory Frameworks. Sustainability (Switzerland), 16(19). https://doi.org/10.3390/su16198720
Du, L., Zhang, Z., Chen, Y., Wang, Y., Zhou, C., Yang, H., & Zhang, W. (2024). Heterogeneous impact of soil acidification on crop yield reduction and its regulatory variables: A global meta-analysis. Field Crops Research, 319(November), 109643. https://doi.org/10.1016/j.fcr.2024.109643
Ferrarezi, J. A., Defant, H., de Souza, L. F., Azevedo, J. L., Hungria, M., & Quecine, M. C. (2023). Meta-omics integration approach reveals the effect of soil native microbiome diversity in the performance of inoculant Azospirillum brasilense. Frontiers in Plant Science, 14(June), 1–15. https://doi.org/10.3389/fpls.2023.1172839
Francioli, D., Kampouris, I. D., Kuhl-Nagel, T., Babin, D., Sommermann, L., Behr, J. H., Chowdhury, S. P., Zrenner, R., Moradtalab, N., Schloter, M., Geistlinger, J., Ludewig, U., Neumann, G., Smalla, K., & Grosch, R. (2025). Microbial inoculants modulate the rhizosphere microbiome, alleviate plant stress responses, and enhance maize growth at field scale. Genome Biology, 26(1). https://doi.org/10.1186/s13059-025-03621-7
Fu, X., Fu, Q., Zhu, X., Yang, X., Chen, H., & Li, S. (2023). Microdiversity sustains the distribution of rhizosphere-associated bacterial species from the root surface to the bulk soil region in maize crop fields. Frontiers in Plant Science, 14(October), 1–14. https://doi.org/10.3389/fpls.2023.1266218
Fujiki, Y., & Bassik, M. C. (2021). A New Paradigm in Catalase Research. Trends in Cell Biology, 31(3), 148–151. https://doi.org/10.1016/j.tcb.2020.12.006
Garg, D., Sridhar, K., Stephen Inbaraj, B., Chawla, P., Tripathi, M., & Sharma, M. (2023). Nano-Biofertilizer Formulations for Agriculture: A Systematic Review on Recent Advances and Prospective Applications. Bioengineering, 10(9), 1–33. https://doi.org/10.3390/bioengineering10091010
Giraldo, J. D., Garrido-Miranda, K. A., & Schoebitz, M. (2023). Chitin and its derivatives: Functional biopolymers for developing bioproducts for sustainable agriculture—A reality? Carbohydrate Polymers, 299(October 2022), 120196. https://doi.org/10.1016/j.carbpol.2022.120196
Hakim, S., Naqqash, T., Nawaz, M. S., Laraib, I., Siddique, M. J., Zia, R., Mirza, M. S., & Imran, A. (2021). Rhizosphere Engineering With Plant Growth-Promoting Microorganisms for Agriculture and Ecological Sustainability. Frontiers in Sustainable Food Systems, 5(February), 1–23. https://doi.org/10.3389/fsufs.2021.617157
Ji, L., Xu, X., Zhang, F., Si, H., Li, L., & Mao, G. (2023). The Preliminary Research on Shifts in Maize Rhizosphere Soil Microbial Communities and Symbiotic Networks under Different Fertilizer Sources. Agronomy, 13(8). https://doi.org/10.3390/agronomy13082111
Jiang, M., Liu, Y., Xue, H., Wang, Y., Wang, C., Yang, F., & Li, X. (2023). Expression and biochemical characterization of a Bacillus subtilis catalase in Pichia pastoris X-33. Protein Expression and Purification, 208–209(December 2022), 106277. https://doi.org/10.1016/j.pep.2023.106277
Kapishon, V., Lorrain, M. J., Leung, A. C. W., Gélinas, A. M., Wu, M., Sarrazin, M., Hrapovic, S., Pagé, A., Monteil-Rivera, F., & Hemraz, U. D. (2023). Encapsulation of Plant Growth-Promoting Bacteria in Poly(itaconic acid) Microspheres by Spray Drying. ACS Agricultural Science and Technology, 3(12), 1185–1193. https://doi.org/10.1021/acsagscitech.3c00356
Kashyap, A. S., Manzar, N., Meshram, S., & Sharma, P. K. (2023). Screening microbial inoculants and their interventions for cross-kingdom management of wilt disease of solanaceous crops- a step toward sustainable agriculture. Frontiers in Microbiology, 14(June), 1–15. https://doi.org/10.3389/fmicb.2023.1174532
Li, K., Xu, R., & Cai, Z. (2024). Aluminum mobilization characteristics in four typical soils from different climate zones during their acidification. Plant and Soil, 504, 29–46. https://doi.org/https://doi.org/10.1007/s11104-024-06476-2
Linzner, N., Loi, V. Van, & Antelmann, H. (2022). The Catalase KatA Contributes to Microaerophilic H2O2 Priming to Acquire an Improved Oxidative Stress Resistance in Staphylococcus aureus. Antioxidants, 11(9). https://doi.org/10.3390/antiox11091793
Liu, Q., Pang, Z., Sun, H., Zeng, X., Kong, X., Li, S., & Shen, Y. (2024). Unveiling the maize-benefit: Synergistic impacts of organic-inorganic fertilizer cooperation on rhizosphere microorganisms and metabolites. Applied Soil Ecology, 193(April 2023), 105171. https://doi.org/10.1016/j.apsoil.2023.105171
Luo, D., Shi, J., Li, M., Chen, J., Wang, T., Zhang, Q., Yang, L., Zhu, N., & Wang, Y. (2024). Consortium of Phosphorus-Solubilizing Bacteria Promotes Maize Growth and Changes the Microbial Community Composition of Rhizosphere Soil. Agronomy, 14(7). https://doi.org/10.3390/agronomy14071535
Ma, H., Li, P., Xiao, N., & Xia, T. (2022). Poly-γ-glutamic acid promoted maize root development by affecting auxin signaling pathway and the abundance and diversity of rhizosphere microbial community. BMC Plant Biology, 22(1), 1–13. https://doi.org/10.1186/s12870-022-03908-y
Morales-Cedeño, L. R., Orozco-Mosqueda, M. del C., Loeza-Lara, P. D., Parra-Cota, F. I., de los Santos-Villalobos, S., & Santoyo, G. (2021). Plant growth-promoting bacterial endophytes as biocontrol agents of pre- and post-harvest diseases: Fundamentals, methods of application and future perspectives. Microbiological Research, 242(September 2020). https://doi.org/10.1016/j.micres.2020.126612
Mukhtar, H., Hao, J., Xu, G., Bergmeyer, E., Ulutas, M., Yang, J., & Schachtman, D. P. (2025). Nitrogen input differentially shapes the rhizosphere microbiome diversity and composition across diverse maize lines. Biology and Fertility of Soils, 61(1), 1–12. https://doi.org/10.1007/s00374-024-01863-4
Muñoz-Torres, P., Cárdenas-Ninasivincha, S., & Aguilar, Y. (2024). Exploring the Agricultural Applications of Microbial Melanin. Microorganisms, 12(7). https://doi.org/10.3390/microorganisms12071352
Novello, G., Bona, E., Toumatia, O., Vuolo, F., Bouras, N., Titouah, H., Zitouni, A., Gorrasi, S., Massa, N., Cesaro, P., Todeschini, V., Lingua, G., & Gamalero, E. (2023). Rhizosphere Bacterial Isolation from Indigenous Plants in Arid and Semi-Arid Algerian Soils: Implications for Plant Growth Enhancement. Processes, 11(10), 1–17. https://doi.org/10.3390/pr11102907
Nunes Ramos, J., Veloso da Costa, L., Viana Vieira, V., & Lima Brandão, M. L. (2025). Challenges in the Identification of Environmental Bacterial Isolates from a Pharmaceutical Industry Facility by 16S rRNA Gene Sequences. Dna, 5(3), 33. https://doi.org/10.3390/dna5030033
Prisa, D., Fresco, R., & Spagnuolo, D. (2023). Microbial Biofertilisers in Plant Production and Resistance: A Review. Agriculture (Switzerland), 13(9), 1–18. https://doi.org/10.3390/agriculture13091666
Rinijapsari, E. (2021). Penggunaan KOH String Test Sebagai Alternatif Identifikasi Awal Prodi D3 Analis Kesehatan Politeknik Katolik Mangunwijaya Penggunaan KOH String Test Sebagai Alternatif Identifikasi Awal Bakteri Gram Negatif. Jurnal Ilmu Kedokteran Dan Kesehatan Indonesia, 1(1), 100–110.
Shahwar, D., Mushtaq, Z., Mushtaq, H., Alqarawi, A. A., Park, Y., Alshahrani, T. S., & Faizan, S. (2023). Role of microbial inoculants as bio fertilizers for improving crop productivity: A review. Heliyon, 9(6), e16134. https://doi.org/10.1016/j.heliyon.2023.e16134
Sharma, A., Mishra, A., & Chhabra, M. (2024). Rapid measurement of bacterial contamination in water: A catalase responsive-electrochemical sensor. Heliyon, 10(5), e26724. https://doi.org/10.1016/j.heliyon.2024.e26724
Tusar, H. M., Uddin, M. K., Mia, S., Kasim, S., Wahid, S. B. A., Makino, T., & Solaiman, Z. (2024). Oxidized alkaline biochar and phosphate solubilizing bacteria mixture enhances direct seeded maize yield in an acid soil. Sains Tanah, 21(2), 219–237. https://doi.org/10.20961/stjssa.v21i2.93130
Upadhyay, S. K., Srivastava, A. K., Rajput, V. D., Chauhan, P. K., Bhojiya, A. A., Jain, D., Chaubey, G., Dwivedi, P., Sharma, B., & Minkina, T. (2022). Root Exudates: Mechanistic Insight of Plant Growth Promoting Rhizobacteria for Sustainable Crop Production. Frontiers in Microbiology, 13(July). https://doi.org/10.3389/fmicb.2022.916488
Wang, M., Sun, H., & Xu, Z. (2024). Characterization of Rhizosphere Microbial Diversity and Selection of Plant-Growth-Promoting Bacteria at the Flowering and Fruiting Stages of Rapeseed. Plants, 13(2). https://doi.org/10.3390/plants13020329
Zhang, L., Feng, Y., Zhao, Z., Cui, Z., Baoyin, B., Wang, H., Li, Q., & Cui, J. (2024). Maize/soybean intercropping with nitrogen supply levels increases maize yield and nitrogen uptake by influencing the rhizosphere bacterial diversity of soil. Frontiers in Plant Science, 15(September), 1–16. https://doi.org/10.3389/fpls.2024.1437631
Zhydzetski, A., Głowacka-Grzyb, Z., Chlebicka, K., & Władyka, B. (2025). Detection and identification of pathogens using agents targeting the bacterial cell wall. Folia Microbiologica. https://doi.org/10.1007/s12223-025-01379-w
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